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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
1
ATAC-seq
Assay category
70
DNA binding
1
DNA accessibility
Target of assay
47
transcription factor
23
histone
23
histone modification
13
narrow histone mark
10
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
393
bam
334
bigWig
325
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
64
bigBed broadPeak
3
tar
1
bedpe
1
hic
Organism
71
Homo sapiens
Biosample type
58
cell line
7
tissue
6
primary cell
Organ
58
liver
12
brain
4
epithelium
4
vasculature
2
blood vessel
1
pancreas
Project
71
AMP
Genome assembly (visualization)
70
hg19
55
GRCh38
Lab
70
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
islet of Langerhans
1
substantia nigra
1
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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