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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
318
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
244
transcription factor
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
318
bam
307
fastq
259
bigWig
239
bed narrowPeak
239
bigBed narrowPeak
48
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
1
bedpe
1
hic
Organism
323
Homo sapiens
Biosample type
300
cell line
17
tissue
6
primary cell
Organ
300
liver
18
brain
5
pancreas
4
epithelium
4
vasculature
2
blood vessel
Project
323
AMP
Genome assembly (visualization)
260
hg19
209
GRCh38
Lab
318
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
323 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
300
tissue
islet of Langerhans
4
1
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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