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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
32
pCHi-C
15
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
85
DNA binding
15
Transcription
10
3D chromatin structure
4
DNA accessibility
Target of assay
73
histone
73
histone modification
42
broad histone mark
31
narrow histone mark
12
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
408
bam
354
bigWig
fastq
316
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
45
tsv
12
bedpe bed3+
10
hic
3
tar
2
ibed
Organism
146
Homo sapiens
Biosample type
122
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
84
brain
14
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
139
AMP
7
T1D
Genome assembly (visualization)
73
GRCh38
38
hg19
Lab
146
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
146 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 22 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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