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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
100
ATAC-seq
2
total RNA-seq
1
pCHi-C
Assay category
157
DNA binding
100
DNA accessibility
2
Transcription
Target of assay
94
control
40
transcription factor
23
histone
23
histone modification
18
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
188
bam
108
bigWig
101
fastq
55
tagAlign
41
bed narrowPeak
32
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
3
tar
1
tsv
Organism
260
Homo sapiens
Biosample type
105
primary cell
99
cell line
56
tissue
Organ
130
liver
28
brain
2
epithelium
2
vasculature
1
blood vessel
Project
260
AMP
Genome assembly (visualization)
541
hg19
GRCh38
Lab
260
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 27 more…
cell line
HepG2
98
1
tissue
liver
31
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 2 more…
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