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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
391
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
244
transcription factor
115
histone
115
histone modification
94
control
66
recombinant protein
narrow histone mark
50
broad histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
619
bam
537
bigWig
314
fastq
284
bed narrowPeak
284
bigBed narrowPeak
189
tsv
75
tagAlign
57
bed broadPeak
55
bigBed broadPeak
3
tar
Organism
682
Homo sapiens
Biosample type
309
cell line
220
tissue
153
primary cell
Organ
475
liver
60
brain
4
epithelium
4
vasculature
2
blood vessel
Project
637
AMP
45
T1D
Genome assembly (visualization)
500
hg19
440
GRCh38
Lab
637
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
682 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
308
1
tissue
liver
23
143
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
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