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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
133
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
77
control
41
transcription factor
15
histone
15
histone modification
10
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
120
bam
110
fastq
56
bigWig
34
bed narrowPeak
33
bigBed narrowPeak
24
tagAlign
15
bed broadPeak
14
bigBed broadPeak
3
tar
1
csv
Organism
135
Homo sapiens
Biosample type
102
cell line
29
tissue
4
primary cell
Organ
99
liver
28
brain
3
blood
3
bodily fluid
3
spleen
2
epithelium
2
vasculature
1
blood vessel
1
pancreas
Project
135
AMP
Genome assembly (visualization)
GRCh38
352
hg19
Lab
135
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ChIP-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
99
GM12878
3
tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
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