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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
468
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
468
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
300
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
55
RNA binding protein
50
broad histone mark
38
narrow histone mark
14
chromatin remodeller
5
other context
5
other post-translational modification
Date released
715
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
471
bam
406
bigWig
404
fastq
378
bed narrowPeak
377
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
486
Homo sapiens
Biosample type
368
cell line
108
tissue
10
primary cell
Organ
360
liver
93
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
6
epithelium
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
486
AMP
Genome assembly (visualization)
353
GRCh38
344
hg19
Lab
486
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
26
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
486 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
352
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 8 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
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