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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
375
DNA binding
10
DNA accessibility
Target of assay
299
transcription factor
81
recombinant protein
73
histone
73
histone modification
56
RNA binding protein
45
broad histone mark
28
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
479
bam
414
bigWig
412
fastq
386
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
385
Homo sapiens
Biosample type
305
cell line
74
tissue
6
primary cell
Organ
300
liver
65
brain
12
blood
12
bodily fluid
4
epithelium
4
spleen
4
vasculature
3
pancreas
2
blood vessel
1
adipose tissue
1
connective tissue
Project
385
AMP
Genome assembly (visualization)
352
GRCh38
329
hg19
Lab
385
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
385 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
293
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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