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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
367
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
367
DNA binding
10
DNA accessibility
Target of assay
291
transcription factor
81
recombinant protein
73
histone
73
histone modification
53
RNA binding protein
45
broad histone mark
28
narrow histone mark
14
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
210
June, 2019
97
May, 2019
70
October, 2019
69
November, 2018
64
April, 2019
50
December, 2017
45
October, 2018
41
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
471
bam
406
bigWig
404
fastq
378
bed narrowPeak
377
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
377
Homo sapiens
Biosample type
297
cell line
74
tissue
6
primary cell
Organ
292
liver
65
brain
12
blood
12
bodily fluid
4
epithelium
4
spleen
4
vasculature
3
pancreas
2
blood vessel
1
adipose tissue
1
connective tissue
Project
377
AMP
Genome assembly (visualization)
346
GRCh38
321
hg19
Lab
377
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
24
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
285
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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