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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
7
WGBS
1
single cell RNA-seq
Assay category
100
DNA binding
7
DNA methylation
1
Transcription
Target of assay
77
control
14
histone
14
histone modification
9
narrow histone mark
9
transcription factor
5
broad histone mark
2
RNA binding protein
1
recombinant protein
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
479
bam
414
bigWig
412
fastq
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
108
Homo sapiens
Biosample type
71
cell line
33
tissue
4
primary cell
Organ
68
liver
27
brain
5
spleen
4
pancreas
3
blood
3
bodily fluid
2
epithelium
2
vasculature
1
blood vessel
Project
108
AMP
Genome assembly (visualization)
22
hg19
7
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
July, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
cell line
HepG2
67
1
GM12878
3
tissue
cingulate gyrus
7
layer of hippocampus
6
spleen
3
2
substantia nigra
4
caudate nucleus
3
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
See all biosamples
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