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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
44
single cell RNA-seq
9
DNase-seq
7
WGBS
6
total RNA-seq
1
FAIRE-seq
Assay category
398
DNA binding
50
Transcription
10
DNA accessibility
7
DNA methylation
Target of assay
308
transcription factor
82
recombinant protein
66
control
58
RNA binding protein
22
chromatin remodeller
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
5
other context
5
other post-translational modification
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
528
bam
463
bigWig
456
fastq
386
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
tagAlign
73
bigBed broadPeak
49
tsv
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
465
Homo sapiens
Biosample type
364
cell line
53
primary cell
48
tissue
Organ
356
liver
46
pancreas
39
epithelium
27
brain
15
blood
15
bodily fluid
9
spleen
6
vasculature
3
blood vessel
3
connective tissue
1
adipose tissue
Project
465
AMP
Genome assembly (visualization)
383
hg19
354
GRCh38
Lab
465
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
465 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
348
1
GM12878
15
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 8 more…
tissue
spleen
6
1
2
layer of hippocampus
8
islet of Langerhans
6
liver
4
2
middle frontal area 46
6
+ See 6 more…
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