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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
596
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
596
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
313
transcription factor
180
histone
180
histone modification
108
broad histone mark
100
control
82
recombinant protein
72
narrow histone mark
63
RNA binding protein
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
599
bam
511
bigWig
483
bed narrowPeak
482
bigBed narrowPeak
412
fastq
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
614
Homo sapiens
Biosample type
376
cell line
223
tissue
15
primary cell
Organ
368
liver
121
brain
56
vasculature
53
blood vessel
21
heart
15
blood
15
bodily fluid
11
epithelium
9
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
kidney
1
adipose tissue
1
connective tissue
Project
614
AMP
Genome assembly (visualization)
455
GRCh38
449
hg19
Lab
614
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
614 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
1
GM12878
15
tissue
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
substantia nigra
15
+ See 18 more…
primary cell
kidney epithelial cell
5
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
See all biosamples
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