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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
388
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
308
transcription factor
88
histone
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
38
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
404
bam
394
fastq
339
bigWig
312
bed narrowPeak
312
bigBed narrowPeak
56
bed broadPeak
56
bigBed broadPeak
11
tagAlign
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
406
Homo sapiens
Biosample type
361
cell line
38
tissue
7
primary cell
Organ
353
liver
20
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
4
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
406
AMP
Genome assembly (visualization)
328
hg19
286
GRCh38
Lab
406
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
406 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
345
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
layer of hippocampus
3
pancreas
2
1
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
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