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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
118
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
77
control
41
transcription factor
15
histone
histone modification
10
narrow histone mark
6
RNA binding protein
5
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
210
August, 2021
200
May, 2022
170
February, 2023
147
February, 2021
126
May, 2020
111
November, 2017
80
October, 2019
69
May, 2021
66
August, 2017
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
16
December, 2017
16
January, 2021
15
April, 2019
10
November, 2020
9
November, 2018
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
118
bam
108
fastq
53
bigWig
33
bed narrowPeak
33
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
tagAlign
3
tar
1
csv
Organism
120
Homo sapiens
Biosample type
100
cell line
16
tissue
4
primary cell
Organ
97
liver
15
brain
3
blood
3
bodily fluid
3
spleen
2
epithelium
2
vasculature
1
blood vessel
1
pancreas
Project
120
AMP
Genome assembly (visualization)
328
hg19
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
histone modification
assembly!
GRCh38
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
97
GM12878
3
tissue
layer of hippocampus
3
spleen
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
pancreatic cell
1
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