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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
8
ATAC-seq
Assay category
415
DNA binding
8
DNA accessibility
Target of assay
242
transcription factor
98
histone
98
histone modification
72
control
66
recombinant protein
60
broad histone mark
38
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
401
bam
342
bigWig
335
fastq
321
bed narrowPeak
314
bigBed narrowPeak
92
tagAlign
70
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
423
Homo sapiens
Biosample type
315
cell line
105
tissue
3
primary cell
Organ
315
liver
107
brain
6
epithelium
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
423
AMP
Genome assembly (visualization)
290
GRCh38
288
hg19
Lab
422
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
14
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
423 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
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