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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
22
total RNA-seq
16
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
277
DNA binding
31
Transcription
30
DNA accessibility
1
3D chromatin structure
Target of assay
238
histone
238
histone modification
157
narrow histone mark
81
broad histone mark
39
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
255
bam
217
bigWig
209
bed narrowPeak
115
tagAlign
104
bigBed narrowPeak
10
bed broadPeak
8
tsv
4
bed bed3+
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
342
Homo sapiens
Biosample type
345
cell line
343
tissue
43
primary cell
8
in vitro differentiated cells
Organ
168
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
19
lung
8
heart
6
liver
4
gonad
4
kidney
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
324
AMP
19
LungMap
Genome assembly (visualization)
218
GRCh38
169
hg19
Lab
324
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
layer of hippocampus
23
lung
10
9
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