Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
7
ATAC-seq
3
Hi-C
1
MPRA
Assay category
315
DNA binding
7
DNA accessibility
3
3D chromatin structure
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
322
fastq
320
bam
275
bigWig
255
bed narrowPeak
249
bigBed narrowPeak
59
bed broadPeak
58
bigBed broadPeak
12
tagAlign
3
bedpe bed3+
3
cool
3
hic
3
tar
1
txt
Organism
325
Homo sapiens
Biosample type
316
cell line
7
tissue
3
primary cell
Organ
315
liver
brain
9
epithelium
8
pancreas
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
323
AMP
3
HPAP
Genome assembly (visualization)
276
hg19
224
GRCh38
Lab
322
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
3
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
326 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
MPRA
cell line
HepG2
315
MIN6
1
tissue
body of pancreas
4
islet of Langerhans
1
omental fat pad
1
spleen
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
Download