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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
300
ChIP-seq
3
Hi-C
1
MPRA
Assay category
300
DNA binding
3
3D chromatin structure
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
15
chromatin remodeller
15
histone
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
715
February, 2021
314
May, 2020
300
November, 2017
299
August, 2021
259
May, 2021
212
August, 2017
204
February, 2023
200
May, 2022
169
June, 2019
168
July, 2018
109
October, 2019
90
July, 2019
86
November, 2018
63
December, 2017
59
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
25
May, 2019
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
fastq
299
bam
253
bigWig
236
bed narrowPeak
236
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
3
bedpe bed3+
3
cool
3
hic
3
tar
1
tagAlign
1
txt
Organism
303
Homo sapiens
Biosample type
301
cell line
3
primary cell
Organ
300
liver
brain
7
epithelium
4
vasculature
3
pancreas
2
blood vessel
Project
301
AMP
3
HPAP
Genome assembly (visualization)
254
hg19
204
GRCh38
Lab
301
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
Hi-C
MPRA
cell line
HepG2
300
MIN6
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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