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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
4
pCHi-C
4
total RNA-seq
2
ATAC-seq
Assay category
316
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
241
transcription factor
66
recombinant protein
56
control
34
RNA binding protein
16
histone
16
histone modification
15
chromatin remodeller
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
0
September, 2017
Available data
319
bam
315
fastq
275
bigWig
250
bed narrowPeak
249
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
9
tsv
3
tar
Organism
326
Homo sapiens
Biosample type
326
cell line
128
tissue
15
primary cell
8
in vitro differentiated cells
4
stem cell
Organ
315
liver
5
epithelium
5
pancreas
2
kidney
1
mammary gland
Project
323
AMP
3
T1D
Genome assembly (visualization)
273
hg19
222
GRCh38
Lab
326
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
326 results
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ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
cell line
HepG2
315
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
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