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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
347
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
241
transcription factor
66
recombinant protein
56
control
47
histone
47
histone modification
34
RNA binding protein
25
broad histone mark
22
narrow histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
388
fastq
386
bam
340
bigWig
295
bed narrowPeak
263
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
26
tsv
12
tagAlign
3
tar
1
csv
Organism
388
Homo sapiens
Biosample type
315
cell line
73
primary cell
Organ
315
liver
brain
72
pancreas
67
epithelium
6
vasculature
3
blood vessel
Project
388
AMP
Genome assembly (visualization)
338
hg19
289
GRCh38
Lab
388
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
BIOSAMPLE
ASSAY
388 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
315
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
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