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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
40
total RNA-seq
15
small RNA-seq
14
RRBS
12
single cell RNA-seq
11
WGBS
10
snATAC-seq
7
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
91
DNA binding
67
Transcription
25
DNA methylation
18
DNA accessibility
7
3D chromatin structure
Target of assay
73
histone
73
histone modification
42
broad histone mark
31
narrow histone mark
18
control
3
RNA binding protein
3
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
153
bam
143
bigWig
71
bed narrowPeak
66
tagAlign
65
bigBed narrowPeak
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
12
bed broadPeak
9
fastq
6
bigBed broadPeak
3
bed bed3+
3
hdf5
Organism
207
Homo sapiens
Biosample type
170
tissue
38
primary cell
Organ
liver
109
brain
25
heart
19
epithelium
19
lung
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
189
AMP
19
LungMap
Genome assembly (visualization)
135
GRCh38
97
hg19
Lab
189
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
22
lung
9
10
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 30 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
+ See 18 more…
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