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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
368
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
76
control
66
recombinant protein
50
broad histone mark
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
369
bam
314
fastq
309
bigWig
286
bed narrowPeak
285
bigBed narrowPeak
58
bed broadPeak
56
bigBed broadPeak
52
tagAlign
4
tsv
3
tar
1
bed bed3+
Organism
384
Homo sapiens
Biosample type
314
cell line
58
tissue
12
primary cell
Organ
308
liver
60
brain
10
epithelium
10
pancreas
6
connective tissue
4
vasculature
2
blood vessel
Project
384
AMP
Genome assembly (visualization)
273
hg19
258
GRCh38
Lab
374
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
384 results
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ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
308
EndoC_BH1
6
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
middle frontal area 46
9
+ See 2 more…
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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