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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
372
DNA binding
27
Transcription
14
DNA accessibility
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
340
November, 2017
319
August, 2021
307
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
398
bam
340
bigWig
331
fastq
293
bed narrowPeak
260
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
26
tsv
3
tar
1
csv
Organism
413
Homo sapiens
Biosample type
249
cell line
82
primary cell
82
tissue
Organ
249
liver
91
brain
72
pancreas
67
epithelium
6
vasculature
3
blood vessel
Project
413
AMP
Genome assembly (visualization)
288
hg19
286
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
20
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
249
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 4 more…
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
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