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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
83
DNA binding
36
DNA accessibility
21
Transcription
DNA methylation
2
3D chromatin structure
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
8
control
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
139
bam
110
bed narrowPeak
104
bigWig
81
fastq
73
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
bedpe bed3+
2
hic
1
csv
Organism
142
Homo sapiens
Biosample type
76
cell line
60
tissue
5
in vitro differentiated cells
1
primary cell
Organ
58
pancreas
52
liver
16
epithelium
15
blood
15
bodily fluid
7
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
142
AMP
Genome assembly (visualization)
130
hg19
129
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
EndoC_BH1
13
1
1
1
GM12878
15
tissue
islet of Langerhans
19
19
1
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
+ See 4 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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