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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
9
DNase-seq
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
85
DNA binding
10
DNA accessibility
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
687
February, 2021
406
November, 2017
391
August, 2017
364
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
120
May, 2019
102
February, 2023
94
December, 2017
82
May, 2022
81
November, 2018
80
April, 2019
76
October, 2018
75
July, 2019
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
90
fastq
88
bam
79
bed narrowPeak
79
bigBed narrowPeak
79
bigWig
14
tagAlign
12
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
1
csv
Organism
96
Homo sapiens
Biosample type
60
cell line
35
tissue
1
primary cell
Organ
52
liver
17
brain
15
blood
15
bodily fluid
7
spleen
3
pancreas
1
adipose tissue
1
connective tissue
Project
96
AMP
Genome assembly (visualization)
78
GRCh38
77
hg19
Lab
96
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
15
tissue
brain
15
2
spleen
6
1
liver
4
2
body of pancreas
2
omental fat pad
1
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primary cell
pancreatic cell
1
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