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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
9
DNase-seq
8
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
85
DNA binding
18
DNA accessibility
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
98
fastq
95
bam
87
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
1
csv
Organism
104
Homo sapiens
Biosample type
60
cell line
43
tissue
1
primary cell
Organ
52
liver
18
brain
15
blood
15
bodily fluid
8
pancreas
8
spleen
2
adipose tissue
2
connective tissue
Project
104
AMP
Genome assembly (visualization)
86
GRCh38
84
hg19
Lab
103
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
June, 2019
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
15
tissue
brain
15
2
spleen
6
1
1
body of pancreas
2
4
liver
4
2
omental fat pad
1
1
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primary cell
pancreatic cell
1
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