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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
10
DNA accessibility
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
6
control
5
chromatin remodeller
other context
3
other post-translational modification
Date released
709
February, 2021
398
May, 2021
394
November, 2017
357
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
93
December, 2017
81
July, 2019
80
April, 2019
76
October, 2018
75
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
fastq
74
bam
68
bed narrowPeak
68
bigBed narrowPeak
68
bigWig
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
75
Homo sapiens
Biosample type
57
cell line
17
tissue
1
primary cell
Organ
49
liver
15
blood
15
bodily fluid
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
75
AMP
Genome assembly (visualization)
67
GRCh38
66
hg19
Lab
75
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
assay_slims!
DNA methylation
target.investigated_as!
other context
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
75 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
GM12878
15
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
omental fat pad
1
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primary cell
pancreatic cell
1
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