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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
164
DNA binding
10
DNA accessibility
7
DNA methylation
Transcription
Target of assay
106
transcription factor
31
histone
31
histone modification
27
control
25
RNA binding protein
16
narrow histone mark
16
recombinant protein
15
broad histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
181
bam
181
fastq
152
bigWig
145
bed narrowPeak
123
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
74
tissue
61
cell line
43
in vitro differentiated cells
3
stem cell
Organ
116
liver
19
epithelium
15
blood
15
bodily fluid
13
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
181
AMP
Genome assembly (visualization)
156
GRCh38
148
hg19
Lab
181
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
181 results
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table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
See all biosamples
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