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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
78
ChIP-seq
27
snATAC-seq
22
ATAC-seq
13
WGBS
9
DNase-seq
3
snDrop-seq
2
pCHi-C
1
FAIRE-seq
Assay category
Transcription
78
DNA binding
59
DNA accessibility
13
DNA methylation
Target of assay
69
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
120
fastq
114
bam
96
bed narrowPeak
86
bigWig
84
txt
73
bigBed narrowPeak
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
9
tsv
8
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bedgraph
2
bed bed3
Organism
239
Homo sapiens
Biosample type
121
tissue
79
cell line
35
primary cell
4
in vitro differentiated cells
Organ
92
bone element
55
liver
15
blood
15
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
13
pancreas
9
spleen
8
skeleton
7
connective tissue
6
epithelium
6
limb
3
kidney
2
brain
1
adipose tissue
Project
206
AMP
33
HPAP
Genome assembly (visualization)
102
GRCh38
100
hg19
Lab
206
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
239 results
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Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
snDrop-seq
pCHi-C
FAIRE-seq
tissue
bone element
84
spleen
6
2
1
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 14 more…
cell line
HepG2
45
1
1
1
GM12878
15
smooth muscle cell of the coronary artery
6
8
iPSC derived cell line
2
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
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