Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
9
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
85
DNA binding
18
DNA accessibility
7
DNA methylation
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
104
fastq
102
bam
94
bigWig
85
bed narrowPeak
79
bigBed narrowPeak
14
tagAlign
13
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
110
Homo sapiens
Biosample type
61
cell line
49
tissue
Organ
53
liver
18
brain
15
blood
15
bodily fluid
12
pancreas
10
spleen
2
adipose tissue
2
connective tissue
Project
110
AMP
Genome assembly (visualization)
93
GRCh38
84
hg19
Lab
109
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
110 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
brain
15
2
spleen
6
1
1
2
body of pancreas
2
4
2
liver
4
2
pancreas
2
1
+ See 4 more…
See all biosamples
Download