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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
DNase-seq
8
Hi-C
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
66
Transcription
34
DNA methylation
8
3D chromatin structure
3
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
693
February, 2021
406
November, 2017
401
August, 2017
365
May, 2021
282
October, 2019
243
August, 2021
241
May, 2020
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
October, 2017
14
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
154
bam
150
bigWig
79
fastq
66
bed narrowPeak
66
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
4
bed bed3+
4
hdf5
1
csv
Organism
181
Homo sapiens
Biosample type
88
tissue
61
cell line
32
primary cell
Organ
60
liver
21
heart
18
connective tissue
17
brain
15
blood
15
bodily fluid
13
epithelium
12
adipose tissue
11
kidney
11
pancreas
10
musculature of body
10
vasculature
9
blood vessel
8
spleen
5
limb
2
artery
2
pericardium
1
eye
Project
181
AMP
Genome assembly (visualization)
148
hg19
143
GRCh38
Lab
181
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
ATAC-seq
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
spleen
6
2
heart left ventricle
2
4
1
liver
4
2
1
body of pancreas
2
2
2
omental fat pad
4
1
+ See 25 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 21 more…
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