Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
85
DNA binding
9
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
667
February, 2021
397
November, 2017
349
August, 2017
315
August, 2021
274
October, 2019
194
May, 2020
193
May, 2021
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
80
April, 2019
78
November, 2018
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
95
fastq
93
bam
85
bigWig
76
bed narrowPeak
70
bigBed narrowPeak
14
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
bed broadPeak
Organism
101
Homo sapiens
Biosample type
61
cell line
40
tissue
primary cell
Organ
50
liver
16
brain
15
blood
15
bodily fluid
10
pancreas
9
spleen
1
adipose tissue
1
connective tissue
Project
101
AMP
Genome assembly (visualization)
84
GRCh38
75
hg19
Lab
100
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
brain
15
spleen
6
1
2
body of pancreas
4
2
liver
4
pancreas
2
1
+ See 3 more…
See all biosamples
Download