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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
DNase-seq
8
ATAC-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
12
histone
12
histone modification
10
broad histone mark
6
control
5
chromatin remodeller
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
304
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
64
November, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
31
June, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
15
November, 2020
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
81
fastq
78
bam
73
bigWig
64
bed narrowPeak
58
bigBed narrowPeak
14
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
bed broadPeak
1
csv
Organism
87
Homo sapiens
Biosample type
46
cell line
40
tissue
1
primary cell
Organ
50
liver
16
brain
15
blood
bodily fluid
10
pancreas
9
spleen
1
adipose tissue
1
connective tissue
Project
87
AMP
Genome assembly (visualization)
72
GRCh38
63
hg19
Lab
86
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
tissue
brain
15
spleen
6
1
2
body of pancreas
4
2
liver
4
pancreas
2
1
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primary cell
pancreatic cell
1
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