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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
11
ATAC-seq
DNase-seq
7
WGBS
single cell RNA-seq
1
FAIRE-seq
1
total RNA-seq
Assay category
70
DNA binding
12
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
697
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
304
October, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
15
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
78
bam
78
fastq
71
bigWig
64
bed narrowPeak
64
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
61
cell line
29
tissue
Organ
50
liver
15
blood
15
bodily fluid
11
kidney
8
spleen
5
pancreas
1
adipose tissue
1
connective tissue
Project
90
AMP
Genome assembly (visualization)
82
GRCh38
63
hg19
Lab
79
AMP-T2D consortium
11
Katalin Susztak, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
DNase-seq
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
total RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
kidney
11
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
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