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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
38
ATAC-seq
26
total RNA-seq
9
DNase-seq
7
WGBS
single cell RNA-seq
1
FAIRE-seq
1
snATAC-seq
Assay category
70
DNA binding
49
DNA accessibility
26
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
664
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
128
February, 2023
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
65
May, 2022
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
111
bam
111
bed narrowPeak
111
fastq
100
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
Organism
152
Homo sapiens
Biosample type
91
tissue
61
cell line
Organ
93
liver
31
pancreas
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
1
musculature of body
Project
152
AMP
HPAP
Genome assembly (visualization)
110
hg19
79
GRCh38
Lab
88
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
award.project!
HPAP
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
snATAC-seq
tissue
liver
4
20
20
2
islet of Langerhans
18
6
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
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cell line
HepG2
45
1
GM12878
15
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