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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
38
ATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
63
DNA binding
48
DNA accessibility
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
111
bam
111
bed narrowPeak
111
fastq
100
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
Organism
111
Homo sapiens
Biosample type
56
cell line
55
tissue
Organ
71
liver
21
pancreas
12
blood
12
bodily fluid
4
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
111
AMP
Genome assembly (visualization)
109
hg19
72
GRCh38
Lab
73
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
award.project!
HPAP
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
GM12878
12
tissue
liver
4
20
2
islet of Langerhans
18
spleen
3
1
body of pancreas
2
brain
2
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