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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
DNase-seq
10
MeRIP-seq
7
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
12
DNA accessibility
7
DNA methylation
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
89
bam
87
fastq
81
bigWig
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
99
Homo sapiens
Biosample type
67
cell line
30
tissue
2
primary cell
Organ
53
liver
17
pancreas
15
blood
15
bodily fluid
9
spleen
6
epithelium
3
connective tissue
2
brain
1
adipose tissue
Project
99
AMP
Genome assembly (visualization)
81
GRCh38
73
hg19
Lab
89
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
MeRIP-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
pancreas
2
1
+ See 3 more…
primary cell
osteoblast
1
1
See all biosamples
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