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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
MeRIP-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
single cell RNA-seq
Assay category
70
DNA binding
7
DNA methylation
4
Transcription
2
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
697
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
305
October, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
October, 2017
19
September, 2020
16
January, 2021
15
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
1
August, 2018
1
August, 2022
Available data
93
bam
87
fastq
85
bigWig
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
Organism
93
Homo sapiens
Biosample type
67
cell line
21
tissue
5
primary cell
Organ
50
liver
15
blood
15
bodily fluid
15
pancreas
8
spleen
6
epithelium
5
connective tissue
Project
93
AMP
Genome assembly (visualization)
75
GRCh38
67
hg19
Lab
83
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
MeRIP-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
2
islet of Langerhans
4
liver
4
pancreas
2
1
body of pancreas
2
primary cell
osteoblast
4
1
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