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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
101
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
101
DNA binding
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
101
bam
86
bed narrowPeak
86
bigBed narrowPeak
86
bigWig
70
fastq
Organism
101
Homo sapiens
Biosample type
60
cell line
31
primary cell
10
tissue
Organ
49
liver
15
blood
15
bodily fluid
12
connective tissue
10
musculature of body
6
epithelium
6
spleen
5
heart
3
eye
3
kidney
Project
101
AMP
Genome assembly (visualization)
86
GRCh38
84
hg19
Lab
101
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
cell line
HepG2
45
GM12878
15
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
cardiac muscle cell
3
epithelial cell of proximal tubule
3
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tissue
spleen
6
liver
4
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