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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
76
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
76
DNA binding
Target of assay
68
transcription factor
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
369
November, 2017
288
August, 2017
242
October, 2019
160
May, 2021
115
May, 2019
90
December, 2017
76
April, 2019
63
October, 2018
50
May, 2020
49
November, 2018
42
August, 2021
35
May, 2024
32
December, 2018
32
September, 2018
27
June, 2019
24
February, 2018
19
January, 2019
15
October, 2017
12
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
76
bam
61
bed narrowPeak
61
bigBed narrowPeak
61
bigWig
49
fastq
Organism
76
Homo sapiens
Biosample type
39
cell line
27
primary cell
10
tissue
Organ
30
liver
13
blood
13
bodily fluid
11
connective tissue
10
musculature of body
6
spleen
4
epithelium
4
heart
2
eye
2
kidney
Project
76
AMP
Genome assembly (visualization)
61
GRCh38
59
hg19
Lab
76
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
cell line
HepG2
26
GM12878
13
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
cardiac muscle cell
2
epithelial cell of proximal tubule
2
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tissue
spleen
6
liver
4
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