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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
394
DNA binding
Target of assay
308
transcription factor
82
recombinant protein
65
control
58
RNA binding protein
22
chromatin remodeller
18
histone
18
histone modification
10
narrow histone mark
8
broad histone mark
5
other context
5
other post-translational modification
Date released
324
November, 2017
181
August, 2017
94
December, 2017
70
November, 2018
58
October, 2018
34
December, 2018
32
September, 2018
25
January, 2019
24
February, 2018
9
October, 2017
6
September, 2017
Available data
462
bam
397
bigWig
394
fastq
376
bed narrowPeak
375
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
394
Homo sapiens
Biosample type
375
cell line
10
tissue
9
primary cell
Organ
364
liver
15
blood
15
bodily fluid
9
brain
6
epithelium
6
spleen
6
vasculature
3
blood vessel
Project
394
AMP
Genome assembly (visualization)
336
hg19
286
GRCh38
Lab
394
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
394 results
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ChIP-seq
cell line
HepG2
360
GM12878
15
tissue
spleen
6
liver
4
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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