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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
510
DNA binding
Target of assay
336
transcription factor
88
histone
88
histone modification
82
recombinant protein
81
control
60
RNA binding protein
50
broad histone mark
38
narrow histone mark
24
chromatin remodeller
5
other context
5
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
496
bam
428
fastq
427
bigWig
406
bed narrowPeak
405
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
510
Homo sapiens
Biosample type
402
cell line
99
tissue
9
primary cell
Organ
364
liver
91
brain
42
blood
42
bodily fluid
13
spleen
6
epithelium
6
vasculature
3
blood vessel
Project
510
AMP
Genome assembly (visualization)
373
GRCh38
372
hg19
Lab
510
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
510 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
GM12878
42
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 3 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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