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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
35
ChIP-seq
9
DNase-seq
6
WGBS
6
snATAC-seq
2
Capture-C
2
Hi-C
1
FAIRE-seq
1
RNA microarray
Assay category
92
DNA accessibility
57
Transcription
35
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
11
control
9
narrow histone mark
8
broad histone mark
7
transcription factor
3
other context
3
other post-translational modification
Date released
601
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
218
June, 2019
198
February, 2023
169
August, 2021
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
72
September, 2018
53
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
12
May, 2023
11
September, 2017
10
April, 2020
10
November, 2020
7
August, 2020
7
December, 2018
7
December, 2019
7
January, 2018
7
January, 2019
5
March, 2019
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
Available data
109
bed narrowPeak
67
bam
64
xls
49
txt
48
bigWig
26
fastq
24
tagAlign
17
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
194
Homo sapiens
Biosample type
149
tissue
cell line
42
in vitro differentiated cells
4
primary cell
Organ
120
kidney
11
liver
9
pancreas
9
spleen
6
connective tissue
4
epithelium
2
adipose tissue
2
brain
Project
195
AMP
Genome assembly (visualization)
119
GRCh38
54
hg19
Lab
120
Katalin Susztak, Upenn
69
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
biosample_type!
cell line
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
WGBS
snATAC-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
tissue
kidney
64
49
6
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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