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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
9
DNase-seq
6
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
104
DNA binding
10
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
49
transcription factor
31
histone
31
histone modification
24
control
16
narrow histone mark
15
broad histone mark
4
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
121
fastq
120
bam
95
bigWig
89
bed narrowPeak
67
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
121
Homo sapiens
Biosample type
74
tissue
cell line
43
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
70
liver
19
epithelium
13
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
121
AMP
Genome assembly (visualization)
99
GRCh38
94
hg19
Lab
121
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic cell
1
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