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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
19
single cell RNA-seq
13
ATAC-seq
12
WGBS
10
ChIP-seq
9
DNase-seq
3
snDrop-seq
1
FAIRE-seq
1
pCHi-C
Assay category
486
Transcription
50
DNA accessibility
12
DNA methylation
10
DNA binding
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
503
bam
491
bigWig
481
tsv
89
txt
72
fastq
26
bed narrowPeak
17
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
csv
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bedgraph
1
bed bed3
Organism
646
Homo sapiens
Biosample type
571
tissue
cell line
49
primary cell
26
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
13
pancreas
9
spleen
8
kidney
8
liver
8
skeleton
6
epithelium
6
limb
2
brain
Project
601
AMP
45
HPAP
Genome assembly (visualization)
498
GRCh38
498
hg19
Lab
601
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
646 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
DNase-seq
snDrop-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
2
6
1
liver
1
4
2
+ See 19 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
pancreatic cell
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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