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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
WGBS
18
small RNA-seq
15
RRBS
10
ChIP-seq
9
DNase-seq
8
Hi-C
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
66
Transcription
33
DNA methylation
18
DNA accessibility
10
DNA binding
8
3D chromatin structure
Target of assay
7
transcription factor
6
control
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
108
bam
108
bigWig
65
tsv
29
bed bedMethyl
29
bigBed bedMethyl
27
fastq
24
bed narrowPeak
19
bigBed narrowPeak
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
135
Homo sapiens
Biosample type
103
tissue
cell line
32
primary cell
Organ
25
heart
20
brain
19
connective tissue
17
liver
13
adipose tissue
13
epithelium
13
pancreas
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
135
AMP
Genome assembly (visualization)
108
hg19
101
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
135 results
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Clear Filters
total RNA-seq
WGBS
small RNA-seq
RRBS
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
2
1
4
2
spleen
2
6
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 21 more…
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