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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
47
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
10
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
109
DNA accessibility
61
Transcription
47
DNA methylation
10
DNA binding
Target of assay
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
134
zippedFastqFolder
55
bed narrowPeak
51
fastq
50
bam
43
bigWig
17
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
227
Homo sapiens
Biosample type
135
primary cell
92
tissue
cell line
Organ
111
pancreas
80
epithelium
47
liver
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
93
AMP
Genome assembly (visualization)
56
hg19
22
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
29
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
227 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
20
4
2
islet of Langerhans
18
6
spleen
2
6
1
body of pancreas
2
2
pancreas
2
1
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