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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
26
total RNA-seq
14
ATAC-seq
9
DNase-seq
6
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
42
DNA binding
28
Transcription
24
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
7
transcription factor
3
control
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
100
fastq
98
bam
95
bigWig
63
bed narrowPeak
31
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
csv
Organism
100
Homo sapiens
Biosample type
74
primary cell
cell line
26
tissue
Organ
79
pancreas
61
epithelium
9
spleen
7
liver
2
brain
1
adipose tissue
1
connective tissue
Project
100
AMP
Genome assembly (visualization)
94
GRCh38
89
hg19
Lab
100
AMP-T2D consortium
Audit category:
32
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
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