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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
107
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
8
DNase-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
181
Transcription
113
DNA binding
89
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
282
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
73
September, 2018
68
July, 2019
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
176
bed narrowPeak
135
bam
124
bigWig
123
tsv
87
fastq
72
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
11
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
394
Homo sapiens
Biosample type
247
tissue
104
cell line
38
in vitro differentiated cells
5
primary cell
Organ
130
kidney
92
heart
87
liver
15
blood
15
bodily fluid
8
embryo
7
pancreas
7
spleen
6
blood vessel
connective tissue
6
epithelium
6
vasculature
2
adipose tissue
2
artery
2
brain
Project
394
AMP
Genome assembly (visualization)
176
GRCh38
126
hg19
Lab
230
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bedMethyl
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
394 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
FAIRE-seq
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
cell line
HepG2
63
9
2
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
primary cell
hepatocyte
4
pancreatic cell
1
See all biosamples
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