Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
29
ATAC-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
1
single cell RNA-seq
Assay category
49
DNA binding
29
DNA accessibility
8
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
13
transcription factor
12
broad histone mark
12
control
12
narrow histone mark
5
RNA binding protein
1
recombinant protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
364
bam
206
bed narrowPeak
173
tsv
90
tagAlign
88
fastq
73
bigBed narrowPeak
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
104
Homo sapiens
Biosample type
43
in vitro differentiated cells
36
primary cell
20
cell line
5
tissue
Organ
18
pancreas
17
epithelium
3
blood
3
bodily fluid
3
spleen
1
bone element
1
bone marrow
1
connective tissue
1
liver
1
thymus
Project
87
AMP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
60
Kyle Gaulton, UCSD
44
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
104 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 11 more…
cell line
EndoC_BH1
16
GM12878
3
HepG2
1
tissue
spleen
3
pancreas
1
thymus
1
See all biosamples
Download